autopvs1-link

berntpopp/autopvs1-link

★ 0 stars Python AI/LLM Updated today

MCP server for AutoPVS1: automated ACMG PVS1 loss-of-function evidence for sequence variants and copy-number variants — variant interpretation as typed tools for LLM agents.

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Quick Install

Copy the config for your editor. Some servers may need additional setup — check the README.

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "autopvs1-link": {
      "command": "uvx",
      "args": [
        "autopvs1-link"
      ]
    }
  }
}

Or install with pip: pip install autopvs1-link

README Excerpt

An MCP (Model Context Protocol) server — and a REST API on the same process — serving PVS1 loss-of-function evidence for variants and CNVs from > [!IMPORTANT] > Research use only. Not clinical decision support. Do not use for diagnosis, > treatment, triage, or patient management. **AutoPVS1 has no API.** It is a web form that renders results as HTML, so every programmatic

Tools (7)

get_cnv_pvs1_dataget_cnvs_pvs1_data_bulkget_server_capabilitiesget_server_healthget_variant_pvs1_dataget_variants_pvs1_data_bulksearch_variants

Topics

acmgautopvs1bioinformaticsclaudeclinical-geneticsfastmcpgenefoundryllm-toolsloss-of-functionmcpmcp-servermodel-context-protocolvariant-interpretation

autopvs1-link

Quick Install

README Excerpt

Tools (7)

Topics

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