Quick Install

Copy the config for your editor. Some servers may need additional setup — check the README.

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "pubtator-link": {
      "command": "uvx",
      "args": [
        "pubtator-link"
      ]
    }
  }
}

Or install with pip: pip install pubtator-link

README Excerpt

An MCP (Streamable HTTP) server over NCBI's [PubTator3](https://www.ncbi.nlm.nih.gov/research/pubtator3/) biomedical literature API: PubMed/PMC search, entity and relation annotation, and a review-scoped retrieval index that returns compact, citable passages instead of raw BioC. > [!IMPORTANT] > Research use only. Not clinical decision support. Do not use for diagnosis,

Tools (20)

build_topic_literature_mapconvert_article_idsdiagnosticsestimate_publication_contextfind_entity_relationsfind_related_articlesfind_related_evidence_candidatesget_citationget_evidence_certaintyget_meshget_neighboring_review_passagesget_pmc_annotationsget_publication_annotationsget_publication_citation_graphget_publication_metadataget_publication_passagesget_research_session_statusget_review_audit_trailget_review_contextget_review_context_batch

Topics

bioinformaticsclaudefastmcpgenefoundryliterature-miningllm-toolsmcpmcp-servermodel-context-protocolnamed-entity-recognitionpubmedpubtatortext-mining

pubtator-link

Quick Install

README Excerpt

Tools (20)

Topics

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