cbio-kb

jim-bo/cbio-kb

★ 0 stars Python 🤖 AI/LLM Updated 1d ago

An MCP server for vector search / RAG on cBioPortal publications

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Quick Install

Copy the config for your editor. Some servers may need additional setup — check the README.

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "cbio-kb": {
      "command": "uvx",
      "args": [
        "cbio-kb"
      ]
    }
  }
}

Or install with pip: pip install cbio-kb

README Excerpt

Agent-maintained knowledge base over cBioPortal publications. A Karpathy-style LLM wiki: drop papers into `data/raw/pdfs/`, run the pipeline, and sub-agents compile them into an interlinked Markdown wiki under `wiki/` that you browse in Obsidian. Two things live in this repo: 1. **`cbio-kb` CLI + package** (`src/cbio_kb/`) — deterministic tooling for

cbio-kb

Quick Install

README Excerpt

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