phylokit-mcp

musharna/phylokit-mcp

★ 0 stars Python API Integration Updated today

MCP server for phylogenetic inference over IQ-TREE 2 — never returns a topology without its bootstrap support

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Quick Install

Copy the config for your editor. Some servers may need additional setup — check the README.

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "phylokit-mcp": {
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ]
    }
  }
}

Or install with pip: pip install phylokit-mcp

README Excerpt

Phylogenetic inference over MCP, driving IQ-TREE 2 through **A topology without support is not a result.** `infer_tree` always runs a bootstrap and always returns per-clade support. There is no flag to skip it. 5 tools, 62 tests against real IQ-TREE (no mocked engine), 10 mutation checks,

Tools (5)

capabilitiescompare_treesinfer_treeselect_substitution_modelsimulate_alignment

phylokit-mcp

Quick Install

README Excerpt

Tools (5)

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