plant-genomics-mcp

musharna/plant-genomics-mcp

★ 0 stars Python Browser/Web Updated 1mo ago

Plant genomics MCP server — 32 tools across 11 backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR) + cross-source synthesis. stdio + Streamable-HTTP transports.

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Quick Install

Copy the config for your editor. Some servers may need additional setup — check the README.

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "plant-genomics-mcp": {
      "command": "uvx",
      "args": [
        "plant-genomics-mcp"
      ]
    }
  }
}

Or install with pip: pip install plant-genomics-mcp

README Excerpt

> **32 tools** for plant-genomics locus lookup over the Model Context Protocol — > 16 single-locus + 12 parallel-batch + 4 cross-source synthesis variants. > Free, public sources: Ensembl Plants, Phytozome BioMart, UniProtKB, > Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, > and BAR (Bio-Analytic Resource for Plant Biology).

Tools (20)

PLANT_GENOMICS_MCP_BLAST_CONCURRENCYPLANT_GENOMICS_MCP_CACHE_DISABLEDPLANT_GENOMICS_MCP_CACHE_SIZEPLANT_GENOMICS_MCP_CACHE_TTLPLANT_GENOMICS_MCP_HTTP_HOSTPLANT_GENOMICS_MCP_HTTP_JSONPLANT_GENOMICS_MCP_HTTP_MAX_BODYPLANT_GENOMICS_MCP_HTTP_PORTPLANT_GENOMICS_MCP_HTTP_STATELESSPLANT_GENOMICS_MCP_HTTP_TOKENPLANT_GENOMICS_MCP_NCBI_EMAILanalyze_locusatted_coexpressionbar_aiv_interactionsbar_efp_expressionbar_gene_summarybiological_contextblast_sequenceensembl_plants_lookup_locusfind_homologs

plant-genomics-mcp

Quick Install

README Excerpt

Tools (20)

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