clue-mcp

swaruplab/clue-mcp

★ 0 stars Python 🔌 API Integration Updated today

Clue.io MCP server

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Quick Install

Copy the config for your editor. Some servers may need additional setup — check the README.

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "clue-mcp": {
      "command": "uvx",
      "args": [
        "clue-mcp"
      ]
    }
  }
}

Or install with pip: pip install clue-mcp

README Excerpt

> Turn a disease gene-expression signature into ranked lists of candidate drugs, gene-knockdown targets, and overexpression hits — from Python, a REST API, or directly inside Claude via the **Model Context Protocol (MCP)**. **clue-mcp** queries the **Connectivity Map (CMap) LINCS 2020** database from the Broad Institute. Give it a list of up- and/or down-regulated genes; it scores perturbation signatures across **12,328 genes** with the Weighted Connectivity Score (WTCS) and returns the perturba

Tools (12)

GETMIN_REPSN_PERMPOSTTOP_NZSCORE_THRESHOLDcmap_drug_enrichmentcmap_list_cell_linescmap_list_perturbation_classescmap_search_perturbagenscmap_target_knockdowncmap_target_overexpression

clue-mcp

Quick Install

README Excerpt

Tools (12)

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